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Coat colors and genetics

Genetic health in horses

A healthy horse can have a foal with an inherited condition. How can that happen? The answer starts with what the foal receives from each parent.

Explore how inheritance affects health, what a DNA test result means and which genetic questions matter when planning a mating.

Explore inherited conditions, DNA tests and breeding in horses

New to the subject? Start with how genetic conditions work. If you already have a laboratory report, the introduction to DNA testing will help you make sense of it.

Understanding genetic conditions in horses

How can a horse pass on a disease-associated variant without being ill?

A gene is a stretch of DNA that helps the body function. Genes can have different versions, called variants. Some variants can cause disease or make a horse more likely to develop a condition.

For a recessive condition, a horse generally needs to inherit the variant from both parents to be affected. For a dominant condition, one copy of the variant may be enough to cause signs of disease. The outcome depends on the particular variant.

Having a variant, having an increased risk and having a disease are different things.

Read the article : Understanding genetic conditions in horses

Sources [1] · [3]

Inherited conditions can affect muscles, skin, the nervous system and other parts of the body. Each has its own effects and pattern of inheritance.

These first guides explain each condition’s effects and inheritance, the populations where the condition or its variant has been documented, and the scope of its genetic test.

A condition documented in a breed does not mean every horse of that breed has it.

Explore the condition guides : Inherited conditions in horses

Sources [2]

DNA tests for inherited conditions in horses

What can a DNA test tell you about a horse’s genetic health?

A DNA test looks for one or more specific variants. Depending on the condition, it may help identify a carrier, support a diagnosis or inform breeding decisions.

A negative result means the variant being tested for was not detected. It does not rule out every genetic condition. Equally, a result showing increased susceptibility does not mean the horse will definitely become ill.

Start by asking exactly which variant or variants the test looked for.

Read the article : DNA tests for inherited conditions in horses

Sources [2] · [3]

Breeding horses: how genetic variants pass to foals

Which genetic variants could a mare and stallion pass to their foal?

For many genes, a foal receives one copy from its dam and one from its sire. Results from both parents help show which combinations the foal could inherit.

Two unaffected carriers of the same recessive condition can have an affected foal. The diagram below explains why, and shows how to read the chances for each pregnancy.

Both parents’ results matter when considering a mating.

Read the article : Breeding horses: how genetic variants pass to foals

Sources [1]

Some variants that influence coat color also affect other functions. The frame overo variant is one example: a foal that inherits two copies is affected by lethal white overo syndrome.

This link is specific to the variant. A horse having a lot of white, or looking similar to another horse, is not enough on its own to establish the genetic risk.

Coat appearance can offer clues, but it cannot replace identifying the variant.

Read the article : Coat colors and health in horsesExplore the coat color guide

Sources [4]

Related horses, genetic diversity and foal health

Why can mating related horses increase a foal’s risk of inherited disease?

Related horses are more likely to carry versions of a gene inherited from a shared ancestor. Their foal can therefore be more likely to receive two copies of the same harmful recessive variant.

Inbreeding does not create that variant, but it can make the associated condition more likely to occur. Maintaining genetic diversity is part of caring for a population’s health over generations.

Genetic health matters for individual horses and for the wider population.

Read the article : Related horses, genetic diversity and foal health

Sources [5]

Recessive inheritance in horses

A recessive example in horses: two parents without the disease can have an affected foal

Consider a recessive condition inherited in the same way by male and female foals. This is called autosomal inheritance. In this example, a foal is affected if it inherits the variant from both parents. The mare and stallion each have one copy of the variant, but neither has this condition.

The mare

Gene version without the variant being studiedGene version with the variant being studied

Has one copy of the variant without having this condition

The stallion

Gene version without the variant being studiedGene version with the variant being studied

Has one copy of the variant without having this condition

Each parent passes one of its two copies of the gene to the foal at random.

25%

Gene version without the variant being studiedGene version without the variant being studied

Recessive example: foal without the disease-associated variant

The foal has not inherited this variant. It is unaffected by this condition and cannot pass this variant on.

50%

Gene version without the variant being studiedGene version with the variant being studied

Recessive example: foal with one disease-associated variant copy, without the condition

The foal has inherited one copy. It does not have this condition, but can pass the variant on.

25%

Gene version with the variant being studiedGene version with the variant being studied

Recessive example: foal with two copies of the same disease-associated variant and the condition

The foal has inherited two copies. In this example, it has the condition.

These chances apply to every pregnancy. Four foals will not necessarily include exactly one without the variant, two carriers and one affected foal.

This diagram shows a simple recessive example. Other conditions have different inheritance patterns, or do not affect every horse with the variant.

Sources [1]

Understanding inherited variants, disease risk and DNA tests in horses

An inherited condition in a horse may become visible after birth

An inherited variant is present from conception, but its effects may appear later. Depending on the condition, age, management and other factors can also play a role.

Some genetic variants increase a horse’s disease risk without making illness certain

Some variants increase susceptibility without causing every horse with the variant to become ill. A result needs to be interpreted in light of the particular variant and what is known about its effects.

A horse’s DNA test reports on specific variants, not all inherited conditions

A laboratory report applies to the variants the test looked for. On its own, it cannot describe the horse’s overall health or every possible risk to its foals.

Sources [2] · [3]

Scientific sources on genetic health in horses

These explanations draw on university resources, a scientific review and guidance from the French Horse and Riding Institute (IFCE). Each condition guide also has its own bibliography.

  1. University of Minnesota — Inheritance of single-gene conditions
  2. Finno and Bannasch — Uses and limits of equine genetic testing
  3. UC Davis — MYHM: an example of genetic susceptibility
  4. UC Davis — Lethal white overo syndrome and frame overo
  5. IFCE — Understanding the inbreeding coefficient