Two bay horses can have a chestnut foal. A dark foal can grow into an almost white gray while keeping the genetic information for its birth color. To understand why, start with the visible coat, then explore the inheritance behind it. The gene articles explain pigment production, coat lightening and progressive graying. The pattern articles focus on patches, spots and mixtures of white and colored hair. Both sections explain genetics, using different visible features as a starting point.
Explanations and diagrams reviewed on 3 November 2026
Does more white hair appear with age while the original base remains genetically present?
Read these as four questions about the same horse, not four compulsory stages in its development. Start with the base, then ask whether a dilution, a pattern or graying helps explain what you see. A horse may combine several of them or have none of these additional effects.
DNA carries biological instructions. A gene is a stretch of those instructions involved in a function, such as pigmentation. Different versions at the same genetic location are called alleles. For the autosomal locations discussed here, meaning those on non-sex chromosomes, a horse normally receives one allele from each parent. The two may be identical or different; they are two versions of one gene, not separate genes for each color.
Horse hair has two main pigments: black-brown eumelanin and red-yellow pheomelanin. Extension, the MC1Rgene, determines whether the hair can make black pigment. Its E version allows this. Without E, the pairs e/e, e/eᵃ and eᵃ/eᵃ give a chestnut base. The rarer eᵃ is another recessive version.
Agouti, the ASIPgene, has versions written A and a that affect where black pigment appears. When the hair can produce black pigment, A/A and A/a restrict most of it to the mane, tail and lower legs, giving bay. With a/a, the base is black. Dilutions, white patterns and graying can then change the appearance of these bases.
A dominant effect can appear with one relevant allele. A recessive effect generally needs two relevant copies, so a horse with one copy can carry and pass on the variant without showing that effect. With incomplete dominance, one and two copies produce different effects, as they do for Cream. Dominance describes the effect of a particular genetic combination. It does not tell you whether an allele is common or healthier, or guarantee the same appearance in every horse.
One effect can hide another
Dilutions change how pigment looks, white patterns change where colored and white hair appear, and Gray gradually adds more white hairs. A horse can have several of these effects together. In a chestnute/e, for example, Agouti cannot visibly restrict black pigment because the hair produces none. The Agoutialleles are still present and can be passed on. An interaction in which one genetic location changes or hides the effect of another is called epistasis.
The genetic result and the visible coat are different things
A genotype describes the allele combination at the genetic locations being considered. A phenotype is a feature you can observe. Two horses with the same tested variants may still differ in shade, amount of white or changes with age. Other genetic factors, season, clipping and lighting also affect what you see. A test result can explain a color category without predicting the outline of every white patch.
DNA is organized into chromosomes. Genetic locations, or loci, on the same chromosome may be inherited together: this is linkage. Extension, MC1R, and KIT, a gene involved in several white patterns, are both on horse chromosome 3. The combination on one chromosome is called a haplotype. Exchange between chromosome copies, called recombination, can separate linked variants. Their position alone therefore does not give one universal inheritance percentage. Before multiplying probabilities from different genes, check whether treating them as independent is justified.
Read each line from left to right: the pair at Extension (MC1R), then the pair at Agouti (ASIP). These lists show the combinations that can give each base, not their probabilities in a cross.
The lists show the 18 possibilities in this Extension and Agouti model, including the rare Extension version eᵃ: nine chestnut combinations, six bay and three black. They are not 18 equally likely outcomes of a mating. The parents’ own combinations determine what they can pass on and each foal’s probabilities. Dilutions, white patterns, graying and other modifiers are excluded here; the lists describe the base rather than the complete coat.
Two E/e parents: how one foal inherits its pair
MC1R
Both demonstration horses have the exact pair shown. These examples explain inheritance; they do not use the mare and stallion entered in the calculator.
MareE/e
StallionE/e
Mare: E/e × Stallion: E/e
Mare ↓ / Stallion →
E50%
e50%
E50%
E/E25%
E/e25%
e50%
E/e25%
e/e25%
All possible pairs at each conception
E/E25%
Two copies of E
E/e50%
One E and one e
e/e25%
Two copies of e
This example assumes both parents have been tested as E/e. Each passes E or e with a 50% chance. The four equally likely routes give 25% E/E, two routes to E/e at 25% each (50% together), and 25% e/e. Only e/e is chestnut-based in this cross. Each conception is independent: earlier foals do not change these chances, and four births need not follow the proportions. Other genes can still change the visible coat.
Start with chestnut, bay and black, then explore the changes that can lighten those bases or make the hair turn gray. Each article explains the visible effect, the letters used in test results, how parents pass the variants on and what the evidence can tell us about testing or health.
A bay has a brown body with black mane, tail and lower legs. A black horse has black pigment over its body too. Agouti helps explain that distribution.
Dun changes how pigment is distributed within colored hairs. A dark stripe along the back is a useful clue, but a stripe on its own does not prove the horse has Dundilution.
A gray horse grows more white hairs over time while keeping the genetic information for its original base color. Its current appearance does not reveal all the variants it can pass on.
These three horses all have a chestnut base. In this example, with no Pearlallele or other coat modifiers, zero, one and two copies of Cr produce chestnut, palomino and cremello respectively. Here N means the allele without Cream; laboratory notation must always be read with its test key. These drawings compare the effect, not an exact shade or a diagnosis from a photograph.
Gray changes the hair, not the inherited birth base
Follow one example horse with a bay base. White hairs increase as it grays, but the inherited information for its bay base stays the same. The drawings show a possible progression rather than fixed ages or a forecast for every horse. A very pale adult coat does not replace its original genetic base.
Patterns: where the color and white appear
Large white patches, small colored spots and white hairs mixed through the body can have different causes. The articles help you recognize the main arrangements and understand their inheritance. A familiar pattern name does not always identify one particular variant, and several patterns can occur together.
White hairs mix with colored body hairs. Here, the head and lower legs retain more color.
These examples help compare characteristic arrangements, not identify a horse from one outline. Each pattern varies, and several can overlap or partly hide one another. The drawings do not predict a foal’s exact markings; the articles explain the inheritance and relevant tests.
Tobiano produces white patches, often crossing the back. A horse can carry one or two copies of the associated DNAvariant, and the amount of white does not reliably distinguish them.
Recognizing the pattern and understanding lethal white syndrome
A horse with one framevariant may have extensive white or almost none. A foal inheriting two copies develops lethal white syndrome and dies after birth because its intestine cannot function normally.
Sabino describes an appearance: irregular white markings, sometimes edged with mixed white hairs. Sabino 1, or SB1, is one identified DNAvariant that can produce it; other variants can look similar.
Similar patterns can arise from different MITF and PAX3variants
Splashed white often combines white legs, a broad white face and blue eyes. Several DNAvariants can produce it, so a useful result names the particular variant rather than just saying splash.
Dominant white is the historical name for a group of KITvariants. Some give small white markings and others an almost white coat from birth; their health implications must be considered individually.
A group of patterns that includes spots, blankets and varnish roaning
Leopard complex can give spots, a white blanket or progressive mixing of white hairs. LP helps produce these features; PATN1 changes their extent. Two LP copies also cause impaired vision in dim light.
White hairs mixed through a coat whose head and points remain darker
Classic roan mixes white hairs through the body while leaving the head and lower legs darker. DNA tests often use nearby markers rather than the causal variant itself. Their reliability depends on which markers are tested and whether they have been validated for the horse’s genetic background.
White hairs concentrated near the flanks and tailhead
Rabicano describes white hairs concentrated especially around the flanks and tailhead. Researchers have studied a candidate DNA region, but the cause and a universal model of inheritance remain unconfirmed.
Pangaré lightens the muzzle, belly and other local areas without producing the unpigmented white patches seen in spotting patterns. Researchers have proposed candidate DNA regions, but no single molecular explanation or diagnostic test applies to all horses.
Flaxen describes a chestnut horse whose mane and tail are much paler than its body. The appearance is familiar, but a single causal DNAvariant and universal inheritance rule have not been established.
Sooty describes dark hairs or shading over a coat, often most visible along the upper body. Studies of bay shade offer leads, but they do not yet explain every horse given this description.
Brindle means a striped appearance, which can have different causes. Brindle 1 is one identified DNAvariant affecting hair texture; its inheritance depends on the X chromosome and on the horse's sex.
How to observe a horse before choosing a genetic explanation
1.Compare the whole coat
Look at the mane, tail, lower legs, white areas, skin and eyes. Photographs of both sides in natural light are useful. A light mane or a dark dorsal stripe is a starting clue, but neither establishes a genotype alone. Compare the combination of features with the relevant article.
2.Keep photographs from different ages
Save foal photographs and record dates, season and clipping. A gray keeps the inherited base it had at birth even as more white hairs appear. Following the same horse over time helps distinguish progressive graying from a pattern that already mixed white and colored hair.
3.Record what is known and how it is known
Keep coat observations, registration records and laboratory results separate. Family coat colors and confirmed parentage can guide what to investigate, but cannot reveal every allele. If a result is missing, record it as unknown. A horse that has not been tested should not be treated as having a negative result.
4.Use the actual report for health questions
Some coat colorvariants also affect other functions. The specific variant, the inherited combination and the strength of the evidence matter more than the coat name alone. For a breeding or health decision, take the laboratory reports and the horse’s clinical history to a veterinarian. A coat description cannot diagnose an individual animal.
Begin with the laboratory’s letter definitions. N usually means the reference result for the variant being examined; it does not mean that the gene is absent. On a Cream report, N/N means no detected copies of the tested Creamvariant. The Creamvariant is written Cr; N/Cr has one copy and can pass it on. Neither result describes every variant of the Creamgene, scientifically SLC45A2, or every cause of a pale coat.
Check the horse’s identity, the report date and the precise list of variants covered. A panel tests several variants together, but its name does not guarantee its contents. A negative result means the covered variants were not detected. It cannot exclude variants outside the panel, recently discovered causes or mechanisms that have not yet been identified.
Check what the test measures. Detecting the presence of a variant is different from identifying both inherited versions or counting repeated DNA segments. For example, UC Davis’s gray presence/absence test does not establish whether a horse has one or two grayalleles or which version it carries. Its separate copy-number test provides more detail, with limits explained in the Gray article.
Check whether the test examines the causal variant—the DNA change responsible for the effect—or a nearby linked marker. A marker is a DNA signpost, and its usefulness must be demonstrated for the population concerned. If appearance and result seem inconsistent, ask the laboratory to review which variants the test covers and the sample details. Interpret the result alongside coat observations and, for health questions, a veterinary assessment.
This guide covers more traits than the calculator currently models. Read the articles to understand a trait, and use the calculator for the combinations it supports. A trait appearing in the guide does not mean it is included in a calculation.
Sources for this explanation [2] · [8] · [6] · [7]
A version at a particular genetic location. At the locations on non-sex chromosomes described here, a horse normally inherits one allele from each parent.
An interaction in which one genetic location changes or hides another’s effect. For example, a chestnut inherits Agoutialleles, but they cannot change the visible distribution of black pigment because its hair produces none.
Laboratory resources explain which variants are tested and how to read their results. Research papers describe the evidence, discoveries and remaining uncertainties. Each article links its explanations to the relevant sources. Published titles stay in their original language so you can find the exact work.